SE3520667

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6885
  • Mimulus guttatus
  • SE3520667
  • Mutator
  • M19
  • scaffold_5:20876568-20877316
  • TTAATTATC
  • TAATTATCGGCTTAATTCCACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAA

Secondary structure and sequence

TSD    TIR
5'



3'
 T      TC                                                           AATAA                    A   C            T  C         T   T     AATA     AATTTCATTTTT A        ----    TTTTCCGAGTACAAAATAAAAAAAAAAATTGTTATTTTCTTGAACTTCAAACCTAATTTCGAGCGGACAAAGTGCGAAAAAATAAAAATTACACCGGAGTATTAAAAAAAACTACATTTTCTTACAAAAGAAAAATAAAAAATAAACTTTTATCACTAAATTATTCGATTAATGGATCTTTTATGTAACTGTTTAAAAATATTAGGTGAAA
  TAATTA  GGCTTAATTCCACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAA     TAATAGCACTTTGCACCCTC AAA ACAATAAATCAT CA AATGCACCC CAA TGAAT    AAGGC            C TTGGTGTT    TTTA                                                                                                                                                                                                                   
  ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||| ||| |||||||||||| || ||||||||| ||| |||||    |||||            | ||||||||    ||||                                                                                                                                                                                                                    
  ATTAAT  CCGAATTAAGGTGAAACGTGGGAACTTTATATGGTAAAACCGTGAAACGTGGGAGCTTT     ATTATCGTGAAACGTGGGAG TTT TGTTATTTAGTA GT TTACGTGGG GTT ACTTA    TTTCG            T TTTTTATA    GATT                                                                                                                                                                                                                   
CT      -T                                                           ATTTA                    C   A            C  A         -   T     AAAA     -----------A -        TTTA    ATAAAAATCACTATAAAAAAATCTTGCGGTTTACAGTTTATAAAAAAAATAAGTAGTTAGTAAAACTTTGATATTTCAAATTCTTATTTTTATGTAAAGTAGTTGTATAAATTTTTAATATAAAAAATAGTTTTATTTTATAAAATGCTTTTTTTTAGTAAGTCGATAAGGCAATAGTTCAATAGACTTTTAGTATAAAGGAAGATTTATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End