SE3530668

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6886
  • Mimulus guttatus
  • SE3530668
  • hAT
  • Hat33
  • scaffold_10:14471367-14472032
  • CAATGTAG
  • GTAGGGCTGGGCATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CAATGTA      C   G     GA    --    ACAATTAT GGCCAGTTACCTACCCGATCCGACCACCCGATTTTGCTGAAAGTTAAAAACCATTACCGACCCGACCATTATGGGTAAGGTAAATGGTTGCAACCGACTTTGTGGGGTAAACAATGGGTGGTTGGTTGGTATTATCGACCATCTATTTATTATTATTTTTTACAATAATAAGATGTTTTAAAAAGTTTTTTCAAAAGAAATTCAAAATTTTGTGAAAAATTATGTTGTAAAAAATCTTAACTTTAAACTTAAAAGTTTATTTTATTAAACTTCTACAATAAGTAAATATATAAT
       GTAGGG TGG CATGG  CGGA  TCGG        C                                                                                                                                                                                                                                                                                                      
       |||||| ||| |||||  ||||  ||||        |                                                                                                                                                                                                                                                                                                       
       CATCCC ACC GTACC  GCTA  ATAG        C                                                                                                                                                                                                                                                                                                      
GATGTTA      A   G     TA    AA    -------- CGGTTGGTTGGGTGAAAGCTGGGCGAAGAAAGCCGGCTATTAAAACAACAGCTCAGCTATTAAAATTGGCTCGGTATATATTTACCCAGCTAGCCGCCATAAGTCAAATGAGTTTGCAGCCAACCAGTTCATCATAGCCAGTTGACTAAAAAAATAATATTTTTGGATTAACATTAAGATTAAAAAAATTACAATTTTATTATATATTTTATTCATTTTTGATTTTTAGAGTTTTTTGTTTAAGCATTTAGAGAAGCATGATAAAGATAAAATATTAAGAATAAGGGATAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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