Plant MITE

SE3510669

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6887
Mimulus guttatus
SE3510669
Tc1/Mariner
St3
scaffold_3:18106506-18106763
TA
TACTCCCTCCGTTCCAAATTAACTGTCGCTTTGG

Secondary structure and sequence

TSD TIR

5'

3'

     C       C    T   C     C     -----GA   TT   T   T   TATTATCTGTCGCGTTAAAATTCCAATGATGCATTAATTACTGTTTTCTCAACTATACCCTTATTAGTTATTACTC
TACTC CTCCGTT CAAA TAA TGTCG TTTGG       AGT  TTA TGT TCA                                                                            
||||| ||||||| |||| ||| ||||| |||||       |||  ||| ||| |||                                                                            T
ATGAG GAGGCAA GTTT ATT ACAGC AAATC       GCG  TGT ATA ATT                                                                            
     C       A    T   A     A     TAACAAC   --   -   -   CTTTTAATTATTTATACGCACCTAAAATCCTTTTATTTATATTATGGGTACATTAATTAATATAGAGTCAATTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3510669

TACTCCCTCCGTTCCAAATTAACTGTCGCTTTGGGAAGTTTTTATTGTTTCATATTATCTGTCGCGTTAAAATTCCAATGATGCATTAATTACTGTTTTCTCAACTATACCCTTATTAGTTATTACTCTTAATTAACTGAGATATAATTAATTACATGGGTATTATATTTATTTTCCTAAAATCCACGCATATTTATTAATTTTCTTAATATGTGCGCAACAATCTAAAACGACAATTATTTTGAAACGGAGCGAGTA

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