Plant MITE

SE3550670

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6888
Mimulus guttatus
SE3550670
PIF/harbinger
To2
scaffold_1340:2026-2267
TTA
AGGCCTCGTTTGGTTGGGGAGATTAGTTATGAT

Secondary structure and sequence

TSD TIR

5'

3'

TT                -----GG           T   TA     ATAATAGGACTTTGTTTGATGTTTGGTATTCCCCATAACTTGTCGGGTCGACCCGCAAATATTATTTTATCACGGCT
  AGGCCTCGTTTGGTTG       GAGATTAGTTA GAT  ACTAA                                                                             
  ||||||||||||||||       ||||||||||| |||  |||||                                                                              
  TCCGGAGCAAACCAAC       TTCTAATCGGT CTA  TCTAA                                                                             
AT                AGTTTTA           T   -T     TTTATTAGATTACCTTGGGTTGATATAATAATCTCGAAGCGACTAGGTTATTTTTTTGTACGGATTTTCTATTCTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550670

TTAGGCCTCGTTTGGTTGGGGAGATTAGTTATGATTAACTAAATAATAGGACTTTGTTTGATGTTTGGTATTCCCCATAACTTGTCGGGTCGACCCGCAAATATTATTTTATCACGGCTTATCTTATCTTTTAGGCATGTTTTTTTATTGGATCAGCGAAGCTCTAATAATATAGTTGGGTTCCATTAGATTATTTAATCTTATCTTGGCTAATCTTATTTTGACAACCAAACGAGGCCTTA

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