SE3520671

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6889
  • Mimulus guttatus
  • SE3520671
  • Mutator
  • M36
  • scaffold_11:18120984-18121435
  • TAAAAAAAA
  • AGGGTAATTGGCATTTGACACC

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAAAAA                GA    CTCCAATT         -              T     T   --       CATA  A                  C      CAT         A      TGTCTACTAAAATTTGTGTCTGAAAAAAATGATATTACCATAATTCAATGGCCAAAATAGTCAAGTATTGTTAATTACATCCGTGAACGAGGAAT
        AGGGTAATTGGCATTT  CACC        ATGCTCATT GGCACTTTGCACCC TAAAT AAA  TATGGTA    GC CCCTCAAATTAAGATTTG TTGGCA   TGCACTCCA GACACT                                                                                               
        ||||||||||||||||  ||||        ||||||||| |||||||||||||| ||||| |||  |||||||    || |||||||||||||||||| ||||||   ||||||||| ||||||                                                                                               A
        TCCCATTAACCGTAAA  GTGG        TACGAGTAA CCGTGAAACGTGGG ATTTA TTT  ATACCGT    CG GGGAGTTTAATTCTAAAT AACCGT   ACGTGGGGT TTGGAT                                                                                               
AAAAAAAA                AC    CACGCTAC         A              C     T   TC       TAAA  G                  A      ATC         C      ATTCATCATCTTACTTTCCTAAAGCTCCCTTAACTTTCCCATTTAAACACTTATTTAAGTGATGGTTAGAAAAATTGATGTCTTTTATAAATATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End