SE3530674

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6892
  • Mimulus guttatus
  • SE3530674
  • hAT
  • Hat6
  • scaffold_5:19732634-19733326
  • GATATATT
  • GATATATTCAGTGGCGGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
           T        CAGGA G         - GTATGCCGGTTGTGCCGAGTCCAAGAATTTACTGTATAGAGGGGTTAAATTTTTGGGGGTTTGGGGGCAGCGCCCCCGGAAAAAAATTTGAACCTTTTTTTGTTGGATAAATTAGGAGAAGGGAAAAAAAATTGACATTTTTTTTTTTTTTTTTTTTTTGGATAAATTAGGAGAAGAAAAAAATTGGGACTTTTTTTGTATATTTTGAATTTTGGGTGGACTAAATAATAATATAGATATAATATAATGTATTTTTGCGGAGAGGGGCTAAAAAAACAAGAAAAATTTAGGATTTTTTTTTTGTATATTT
GATATATTCAG GGCGGATC     C AAAATTCAG G                                                                                                                                                                                                                                                                                                                      
||||||||||| ||||||||     | ||||||||| |                                                                                                                                                                                                                                                                                                                      T
TTATATAGGTC CCGCCTAG     C CCCACCGGT C                                                                                                                                                                                                                                                                                                                      
           C        --ATG -         T ATACGGTACCTGGTGGGGTTTAATGCTTTTATTTAAACGGAATCACCGTTTCTAGAGGTTCAACAATTTATTTCAGTACTCAAGCTGAGGTAATACATTACATGTTTTTTCATAACAAATTAAAAAAACAGATTTAAAGAAAACTCGGGGAGAGGGTATTTGTGTAATATAATATAGATATAATGATAAATCAGGTGGGTTTTAAGTTTTATATGTTTTTTTTAGAATTGAAAAAAGAAACAAAAAATCGGGGAGAGGGGTTTTTGTGTTATATAATATAGATATAATAATAAATCAGGTGGGTTTTAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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