Plant MITE

SE3520675

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6893
Mimulus guttatus
SE3520675
Mutator
M7
scaffold_12:18305379-18305934
TTTATTCAA
AAGGGCAAATTGCACTTCGCCCCCTCAAAAAATGTTGGTTTTGCACTTTCCCCCCTCAAAATAGAAAAATGAGACTCTCCCCCTTAAAAATATATAACTCGGTGCACTTTGCCCCAAATGTGTATTTTCGAGCTAATTCTTGTCGGATTTGAGT

Secondary structure and sequence

TSD TIR

5'

3'

TTTATTC              C  C                                                          C                      C                              AGC  A           TT     --   T -    GCGCAATTTCATCTTTTAAGGCTTTAAATGTCATTTAATCTTTTTTCACCCTACATTACAATGATTAAGAAGAACAAAGAACAAATTTTGTTTAATTTGGAAGAAAAT
       AAGGGCAAATTGCA TT GCCCCCTCAAAAAATGTTGGTTTTGCACTTTCCCCCCTCAAAATAGAAAAATGAGACT TCCCCCTTAAAAATATATAACT GGTGCACTTTGCCCCAAATGTGTATTTTCG   TA TTCTTGTCGGA  TGAGT  AAG T GGAA                                                                                                            
       |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||   || |||||||||||  |||||  ||| | ||||                                                                                                             
       TTCCCGTTTAACGT AA CGGGGGAGTTTTTTACGGTCAAAACGTGAAAGGGGGGAGTTTTATCTTTTTACTCTGA AGGGGGAATTTTTATATATTGA CCACGTGAAACGGGGTTTACACATAAGGGC   AT AAGAGTGGCTT  ACTTA  AAA T TACA                                                                                                            
AACTTAT              C  A                                                          T                      A                              CAA  A           --     AC   - A    GTAAAATGTAGAAAGAGAACTCTTAGGAGGAAAGTCTCAATTCATCCCAAGGGTTTAATTGTTTTAATAGAAGGGTTTAACTACTATAAGCGAAGGTTCAATCTGCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520675

TTTATTCAAGGGCAAATTGCACTTCGCCCCCTCAAAAAATGTTGGTTTTGCACTTTCCCCCCTCAAAATAGAAAAATGAGACTCTCCCCCTTAAAAATATATAACTCGGTGCACTTTGCCCCAAATGTGTATTTTCGAGCTAATTCTTGTCGGATTTGAGTAAGTTGGAAGCGCAATTTCATCTTTTAAGGCTTTAAATGTCATTTAATCTTTTTTCACCCTACATTACAATGATTAAGAAGAACAAAGAACAAATTTTGTTTAATTTGGAAGAAAATTTCGTCTAACTTGGAAGCGAATATCATCAATTTGGGAAGATAATTTTGTTAATTTGGGAACCCTACTTAACTCTGAAAGGAGGATTCTCAAGAGAAAGATGTAAAATGACATATAAACAATTCATTCGGTGAGAAATAAACCGGGAATACACATTTGGGGCAAAGTGCACCAAGTTATATATTTTTAAGGGGGATAGTCTCATTTTTCTATTTTGAGGGGGGAAAGTGCAAAACTGGCATTTTTTGAGGGGGCAAACTGCAATTTGCCCTTTATTCAA

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