SE3550676

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6894
  • Mimulus guttatus
  • SE3550676
  • PIF/harbinger
  • To8
  • scaffold_2:13114448-13114793
  • TAG
  • GGAGAGTGTTTAACTAAGCTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    A      AA          ----  -    TTAAAAAGAGCTTATAAGATGTTTTAGAGCTTATAAGCTCTTTCAAAGTGTTTGGTAATTTTTTTTAAAAAGATCTTAATTTTTTTTTAAATAAGTTGTTGAAGAGCAAATAAGATATTTTTAAATAAGTACCTCTACC
  GGAG GTGTTT  CTAAGCTTAT    AA GATG                                                                                                                                           
  |||| ||||||  ||||||||||    || ||||                                                                                                                                           C
  TCTC CACAAA  GATTCGAATA    TT TCGA                                                                                                                                           
GA    C      CC          AAAT  G    CTATTCGAGAATACAGACTATTCTACAAAATTCTCGACTATTCAACAATATAGAATAAAAATCCTAATTAAAAATCTCACAAACCTGTTATTCGAATAAAGGATAAAAATGAGTAATATTCTAGAATTTGTTTTTACAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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