SE3510678

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6896
  • Mimulus guttatus
  • SE3510678
  • Tc1/Mariner
  • St3
  • scaffold_4:4383814-4384080
  • TA
  • TACTCCCTCTGTTCCATAATATCTGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
               AT    TC    TCTTT  A    TTATTTTGTTCCATATTATCTGTCACTTTACAATTCCAATGCGGCATTAATTGCTTATTTTTCAATTTTACCCTTATTAACTCTATACCACTCTT
TACTCCCTCTGTTCC  AATA  TGTC     TG GAAT                                                                                               
|||||||||||||||  ||||  ||||     || ||||                                                                                                
ATGAGGGAGGCAAGG  TTAT  ACAG     AG TGGA                                                                                               
               AT    CC    CAAAA  -    ATCGTGTTTAGAATTCTTAGAGTTATTTATACAGAACTAAAATCCTTTTATCTATAACTATCTGGTTTTATGGGAACAAATAATTAATTATGTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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