SE3520680

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6898
  • Mimulus guttatus
  • SE3520680
  • Mutator
  • M55
  • scaffold_9:13170987-13171268
  • TTATTTTAA
  • TAAGGGTGCAAATTTAGACCGGATGGC

Secondary structure and sequence

TSD    TIR
5'



3'
TTATTT      TGC      A  CC     -  CTGT       GGG         GA   AG   -GA      C    A  G   AAATAAAAA    ATTAGGATTCTAATAATTGAAAAAAAAAAAAAAAAAAAAAACACGTA
      TAAGGG   AAATTT GA  GGATG GC    TTTAATA   AAATCGGAT  CAT  GAT   TTGACA GTGG TA TTT         TATA                                               
      ||||||   |||||| ||  ||||| ||    |||||||   |||||||||  |||  |||   |||||| |||| || |||         ||||                                                
      ATTCTC   TTTAAG CT  CCTAC CG    AAATTAT   TTTAGCCTA  GTG  TTA   AACTGT CGCC GT AGA         TTCA                                               
AATTTT      TAA      A  CT     T  CTAT       --A         AG   -A   AAA      A    -  G   --------A    GAATTGAAAAGTATTTAGTGTAACTAATATTAATCCCAATCTCCCCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End