SE3520681

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6899
  • Mimulus guttatus
  • SE3520681
  • Mutator
  • M18
  • scaffold_14:16251887-16252294
  • TAAGAAGAA
  • AGGGCAAATTGCATATCACGCCCTATAAGTTTTTAATTTTCGCTCTTTACCCCCTCAAAATTTGAAAAAG

Secondary structure and sequence

TSD    TIR
5'



3'
TAAGAAGA        T     A    G         T    A     C  T    A      -CA       A     TAAATGT        AAC     ATACTT    CACA         T       T   GATGGATTTTTAACCGAAATTGGGTGTTTTTTTTTGCATGTTGCCCCTTTAAAAGTTATTTTTGTTGCA
        AGGGCAAA TGCAT TCAC CCCTATAAG TTTT ATTTT GC CTTT CCCCCT   AAATTTG AAAAG       CCCCCTTC   ATGTT      GTTG    TTGCCCCAA AGCAAAA TCC                                                                     
        |||||||| ||||| |||| ||||||||| |||| ||||| || |||| ||||||   ||||||| |||||       ||||||||   |||||      ||||    ||||||||| ||||||| |||                                                                      
        TCCTGTTT ACGTG AGTG GGGATATTT AAGA TAAAG CG GAAA GGGGGA   TTTAAGT TTTTC       GGGGGGAG   TATAA      CAAC    AACGGGGTT TCGGTAA AAA                                                                     
AAGAAGAA        T     A    G         T    G     C  T    -      ATG       A     -TCTATT        CTT     CTAAAC    ATCA         T       -   AAACCCCGTAACACTTTGTTTTTATTGTAAAATTTCCCTGTTACACATCTTTTTACAATTCCCCGTTGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End