Plant MITE

SE3510684

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6902
Mimulus guttatus
SE3510684
Tc1/Mariner
St5
scaffold_7:10332918-10333185
TA
TACTCCCTCCGTCCCATTTTAAATGTC

Secondary structure and sequence

TSD TIR

5'

3'

         C     ATT   A     --     T GTGGTTACGCGTAGATTAAGATAGTCAATAAATATGTATAGATTATACCAAAAATAGCATAGTAAATACTAAAATACCCTTGTTATTAATTATTTTTTA
TACTCCCTC GTCCC   TTA ATGTC  GTTTT T                                                                                                   
||||||||| |||||   ||| |||||  ||||| |                                                                                                   A
ATGAGGGAG CAGGG   AAT TACAG  AAACC T                                                                                                   
         A     AAT   A     AA     - CACAAAAAAAACAGGGTTTAATAAACAGTAAAATCTCAAAGTTATACCATAATTAACGTAAAAATAGTTAAAACGGGGAATAGTGAGAATTAATCAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3510684

TACTCCCTCCGTCCCATTTTAAATGTCGTTTTTTGTGGTTACGCGTAGATTAAGATAGTCAATAAATATGTATAGATTATACCAAAAATAGCATAGTAAATACTAAAATACCCTTGTTATTAATTATTTTTTAATTAACTAATTAAGAGTGATAAGGGGCAAAATTGATAAAAATGCAATTAATACCATATTGAAACTCTAAAATGACAAATAATTTGGGACAAAAAAAACACTCCAAAAAGACATATAATAAGGGACAGAGGGAGTA

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