SE3550685

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6903
  • Mimulus guttatus
  • SE3550685
  • PIF/harbinger
  • To17
  • scaffold_11:1441689-1442013
  • TTA
  • AGGGCATCTCCAATGGAGTAAGCAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                           -  GGTCTCCAAATTTGAATTTGGAGACCCGTATAGAGACCCGATGGAATCTTAGAGTCTCTAAAAAATAAAATCTCACAGTGGAGGGCTCCATAATTTTGAGTTCCTAAACAATGTCCAATGAAATACACATG
  AGGGCATCTCCAATGGAGTAAGCAAAT CG                                                                                                                                   
  ||||||||||||||||||||||||||| ||                                                                                                                                    
  TCCCGTAGAGGTTACCTCATTCGTTTG GG                                                                                                                                   
AT                           A  TAAACCGAAGTTTTATATCTTTAACACCTTCTTTTAAGTTGTGGTTATTCTTTAAATCACCCCGAGATTTAAAAGTCTAAAAACGTATTAGAGGTTTGAACAAGGATTTATATCCTGAAGCAAACCTCTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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