SE3520687

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6905
  • Mimulus guttatus
  • SE3520687
  • Mutator
  • M21
  • scaffold_4:9446337-9446779
  • GAATATAAA
  • GAAATGATAAATGTCGTTTTAATTTTACTAATGTCGTTCTGACTTCGAAAGTGATTTTGACTATTTTCTATTTTGAATTTGGCAAAGTTCGAAAGACGGAAACCGTAGTCCTTTGAGATAACTTTCCAAT

Secondary structure and sequence

TSD    TIR
5'



3'
GAATATAAACT  AA                 A    AC          C          A                  TAT                    A  G C    ACC     C       A  A T   C   ACAACATG    A  T              G   C           TGCA       C      AATTTTACATAATTTAAAA
           GA  TGATAAATGTCGTTTTA TTTT  TAATGTCGTT TGACTTCGAA GTGATTTTGACTATTTTC   TTTGAATTTGGCAAAGTTCG AA A GGAA   GTAGT CTTTGAG TA C TTC AAT        AATC CC GGATTGGATGTCGG TGA AAAGTTATGCA    TGAGTTA GTTTTA                   
           ||  ||||||||||||||||| ||||  |||||||||| |||||||||| ||||||||||||||||||   |||||||||||||||||||| || | ||||   ||||| ||||||| || | ||| |||        |||| || |||||||||||||| ||| |||||||||||    ||||||| ||||||                    
           CT  ACTATTTACAGCAAAGT AAAA  ATTACAGCAA ACTGAAGTTT CACTAAAACTGGTAAAAG   AAACTTAAACCGTTTTAAGT TT T CCTT   CATTA GAAACTC AT G AAG TTA        TTAG GG TCTAACCTACAGCC ACT TTTCAATACGT    ACTTAAT TACTTG                   
AAATATAAGCC  CC                 C    GT          A          G                  CTC                    C  G A    AAA     A       A  C T   A   GATTAAAA    C  T              A   C           ----       -      TGACGGGTGTTGAAACTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End