SE3520689

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6907
  • Mimulus guttatus
  • SE3520689
  • Mutator
  • M56
  • scaffold_6:14064045-14064830
  • TTAATTGTA
  • TAATTGTAGGGTAAAATTCATTTTGCACCCCTGTACTATGCGAAATGTATCATTTATCCACCTGAAGTATAGAAAACATCAAACACCCCCCTG

Secondary structure and sequence

TSD    TIR
5'



3'
 T      T                                 C    T             A     A           A               -CC     TTTTTTTTCTAATTCCGTTAGTCAAACCCTTTGACCGACTATTGCAAAGAAATGTTGGCTTTTTTTTTTTTTATTAATGAAAATACCCAAAAAATTTCTATATATAGGATGCTTCGTTTTGACAAATGTTCACCGGATTTTTCACCTTTTTCAGCCATTTTTTTCACTTTATTCAATCATTTACTTAACATTTTCAGCCATTTTTCTTATAAAAAAGCTGAATAGTCGAATAAATAAGAATGAAGCTTTGCACATTATGAATGTAAACCCACAAAAAGGAAAACTAAAAGC
  TAATTG AGGGTAAAATTCATTTTGCACCCCTGTACTATG GAAA GTATCATTTATCC CCTGA GTATAGAAAAC TCAAACACCCCCCTG   GTTAG                                                                                                                                                                                                                                                                                                   
  |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| ||||||||||| |||||||||||||||   |||||                                                                                                                                                                                                                                                                                                   C
  GTTAAT TCCCATTTTAAGTAAAACGTGGGGACATGATAC TTTT CATAGTAAATGGG GGATT CATATCTTTTG AGTTTGTGGGGGGAT   AAATT                                                                                                                                                                                                                                                                                                   
AT      -                                 A    C             G     A           A               AAA     GCCAGTTACCAGTTTAAAAATTGCCACAATTTAAAACTCACACGTTACTGAGAAAATGAGACAAAAATACAAACTATATTAAGTATTACAAAAGATCCGTATAAAAAACACCTAACAACTGCCAAAGATCACAAGCAAGTTTAATCCCGAAAAACAGCTAAAATCTTAAACTAAAATAAAAACCAAAAGAAAAAGCTCCTAAAAAGGTAATATTATACTTTTAGAAACAAAAATTAAACGTTAAGAAAGTATACCAAAATAAGGCTAAAATCCCAAAGAAAATCTAAAGTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End