SE3530690

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6908
  • Mimulus guttatus
  • SE3530690
  • hAT
  • Hat23
  • scaffold_2:1511600-1512039
  • CATGCATC
  • ATGCATCCAGTGGCGGATCC

Secondary structure and sequence

TSD    TIR
5'



3' 
C      C   T         A  ATTTTTGCCAAGGGGGTTCGAAATTGTAGAATAAAAAATTTAAATATCACTTTATAAAAATAGTGGACTAAAAATTTACAATTTACAAATTTTGGGTGAATTGTGGAAATATTTAAAGAGAAAAAATGTGAAAATGTTAAAATTAGTGGACCAAAAATTTACAATTTAAAATTTTTGGGTGAATTGTGGAATATTT
 ATGCAT CAG GGCGGATCC GG                                                                                                                                                                                                    
 |||||| ||| ||||||||| ||                                                                                                                                                                                                    A
 TACGTA GTC CCGCCTAGG TG                                                                                                                                                                                                    
C      C   C         -  GATACCAGATCCCACACGTCAACGTGTGGGAACCCAAACCTGTTTATAATGACAATATCTATTAAACTGTTGTTTCCAACAACCAACTCCACCATTTCTATAAGATTGAGGTGATTATCCAGTTCCCAAGCTAAGGGGTGAGATTTTTTTTACTGAAGAAAAAGTATAGAATTGTAAAAGTGTAAAAAAAAGAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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