SE3520691

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6909
  • Mimulus guttatus
  • SE3520691
  • Mutator
  • M17
  • scaffold_7:2895823-2896071
  • TTGTATTTA
  • GTATTTAGGGTAAATTACAATCACCCCTGAGGTAAGT

Secondary structure and sequence

TSD    TIR
5'



3'
 TT    TT               -CA -         --    TTTAT        -C      --     TTTCAT           TT    -   AA         T         -AA      ATT
   GTAT  AGGGTAAATTACAAT   C CCCTGAGGT  AAGT     TTACAAAA  AATCCT  CATTT      AATTACATTTA  CCCT TGT  TTTGTAAAT TCTTACATT   CACCCT   
   ||||  |||||||||||||||   | |||||||||  ||||     ||||||||  ||||||  |||||      |||||||||||  |||| |||  ||||||||| |||||||||   ||||||    
   TATG  TCCCATTTAATGTTG   G GGGACTTCA  TTCA     AATGTTTT  TTGGGA  GTAAA      TTAATGTAGGT  GGGA ACA  AAATATTTA AGAATGTAG   GTGGGG   
ATT    -T               TAA A         AT    -CGTT        TT      AG     --CCCT           -T    T   CC         C         GTG      ATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End