SE3530692

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6910
  • Mimulus guttatus
  • SE3530692
  • hAT
  • Hat28
  • scaffold_14:6096912-6097322
  • GTATACGG
  • GTATAC

Secondary structure and sequence

TSD    TIR
5'



3' 
        ---    GGGGCGAGTCCACCCTTGGGCAAGGGTGGACTCAAGCCCACTCTCATTTTATTATTTTTCCCCCTATATTATACCATATTTCTATTTAGCCCACCTAAATTTTATTTACTAGCCCACCCAAAATTTCATTTAATGCAAAAGAAGCCCCATATTTTATTAATTAGCCTACCCAAAATTTAAATTAATACAAAAA
  GTATAC   GGCA                                                                                                                                                                                                 
  ||||||   ||||                                                                                                                                                                                                  
  CATATG   ACCG                                                                                                                                                                                                 
GG      GTC    CTCCGGTCCTTAAGTCAATTCCCCCCCGAAGTTAAAAGCCCCCAAGCCCCCGTCGCGGGGGCTCTAAAAAAATCCTAAAAAAACTTTTATCCTTTTCCTCTTTGCTCTTTTTTTTTCTTTTTTTTTGATTTAAAATCTCAAAAAAAACATAATTAAACCTAAAACCCACCCGATTAATTATTTTAAACCCTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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