SE3550693

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6911
  • Mimulus guttatus
  • SE3550693
  • PIF/harbinger
  • To6
  • scaffold_8:6204255-6204667
  • TAA
  • AGGCCTCGTTTGCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               GTAGC     --  CTCTATTAACTAAATAGTAGGGGTTAGTAAGATGTTTGGTTGAAGAGATTCGTATTTAGTCAAGCCCGCTATTACACTTAAAGCCCGCAATTAAGTGCTATTATTTGGTTAAATTAGTAGCACCCCTCCCCCTGCGATTAATATTGTAGGGGGTGATTAAAAGAGGAAAATACAATTTT
  AGGCCTCGTTTGCTT     TATTA  AC                                                                                                                                                                                   
  |||||||||||||||     |||||  ||                                                                                                                                                                                    
  TCCGGAGCAAACGAA     TGGAT  AG                                                                                                                                                                                   
AA               -----     AT  CCTAATGTAACTTAATCCACTCTAACCTAATTATAGAGTGACTGATTAATTAATAAATCAGTCATTCTACAAACTAAGCAATCTAATTTAGAACATAATTTAAACAATTTAAGACCATAAATTACACTTAACAGATTTTTCTTAAAATTAATTTTTTCAATTCTATAACAAAATTCCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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