SE3520694

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6912
  • Mimulus guttatus
  • SE3520694
  • Mutator
  • M2
  • scaffold_5:16832088-16832357
  • TTTTTATAA
  • AAGGGCAAATCACGGCCACCCACCTAAGGTAAGATCAAATTACGAAAAAAAAATCTTTCAGTTTGGATAACTACAACTACCCCCCTCAACTATGTATTGTCTTACGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTAT          CAC        A  T      A A        C        AAT      -          C                 A             TA  A AAAA -       TCA     TT
       AAGGGCAAAT   GGCCACCC CC AAGGTA G TCAAATTA GAAAAAAA   CTTTCA GTTTGGATAA TACAACTACCCCCCTCA CTATGTATTGTCT  CG G    C CCCTCAT   GTTGG  
       ||||||||||   |||||||| || |||||| | |||||||| ||||||||   |||||| |||||||||| ||||||||||||||||| |||||||||||||  || |    | |||||||   |||||  A
       TTCCCGTTTA   CCGGTGGG GG TTCCAT C AGTTTAAT CTTTTTTT   GGGAGT CAAACCTATT ATGTTGGTGGGGGGAGT GATATATAACAGA  GT C    G GGGAGTG   CAATT  
AATATTT          ATA        -  -      A G        A        ---      A          A                 C             AG  G --AG T       CCA     TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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