Plant MITE

SE3550696

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6914
Mimulus guttatus
SE3550696
PIF/harbinger
To10
scaffold_12:15771525-15771761
TAA
AGAGTGCGTTTGGATGGAAGGATTTGGGGAGGGATTTGA

Secondary structure and sequence

TSD TIR

5'

3'

TA  A                           -       G T      -AAG      G   TGACTCCAATTTTGGAGTCATTTGAAATCCACCTCAATTGCTCAAAACATAACTAAA
  AG GTGCGTTTGGATGGAAGGATTTGGGGA GGGATTT A TTGGGG    GGATTT AAA                                                         
  || ||||||||||||||||||||||||||| ||||||| | ||||||    |||||| |||                                                         A
  TC CACGTAAACCTACCTTCCTAAACCCCT CCCTAAA T TTAGGT    TTGTTT AGG                                                         
AA  C                           T       G -      ATTA      -   GAACCTGAACAAACCTAACTCCCTAAACCCCTACTTAAAGTTTAGGTGTGGGGAGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550696

TAAGAGTGCGTTTGGATGGAAGGATTTGGGGAGGGATTTGATTTGGGGAAGGGATTTGAAATGACTCCAATTTTGGAGTCATTTGAAATCCACCTCAATTGCTCAAAACATAACTAAAAAGGAGGGGTGTGGATTTGAAATTCATCCCCAAATCCCTCAATCCAAACAAGTCCAAGGGATTTGTTATTATGGATTTGAAATCCCTTCCCCAAATCCTTCCATCCAAATGCACCCTAA

Copy Cancel