Plant MITE

SE3550697

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6915
Mimulus guttatus
SE3550697
PIF/harbinger
To2
scaffold_10:2157024-2157250
TTA
AGGCCTCGTTTGGTTGCCAAGAT

Secondary structure and sequence

TSD TIR

5'

3'

TT                CC     A  A       -------------  C  ATGAAACCCAATTATATTATTTGACCTTGGAAGATCCAATAGAAAAACATGCCTAGACGGCAAGATA
  AGGCCTCGTTTGGTTG  AAGAT AG TTAAATA             AT TA                                                                   
  ||||||||||||||||  ||||| || |||||||             || ||                                                                    
  TCCGGAGCAAACCAAC  TTCTA TC GGTATTA             CC TG                                                                   
AT                CC     A  -       ATTGATTTATTAA  -  AAATAAACTACAAACCATAGGAATTATTGAACGCCCCAGCTGGGCGTTTATAATATAATAGTACCGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550697

TTAGGCCTCGTTTGGTTGCCAAGATAAGATTAAATAATCTAATGAAACCCAATTATATTATTTGACCTTGGAAGATCCAATAGAAAAACATGCCTAGACGGCAAGATAAGCCATGATAATATAATATTTGCGGGTCGACCCCGCAAGTTATTAAGGATACCAAACATCAAATAAAGTCCAATTATTTAGTTAATTATGGCTAATCTTCCCAACCAAACGAGGCCTTA

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