Plant MITE

SE3530698

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6916
Mimulus guttatus
SE3530698
hAT
Hat35
scaffold_14:16591752-16592150
TTCATATA
ACAGTGGCGGATCTA

Secondary structure and sequence

TSD TIR

5'

3'

TTCATAT            C  GACAACATT        G  CGATTTTTTT        ATATATCCAACGGGAGGTTATAATTTTGGAGATTTCAGGGGCAGCGCCCCCGAATTTTTTTTCGGGTTATTCACAAAATATTGCTAAAATAAGTATATATTTATAATTTTGAAGTAAAAAAATATATTTTAGTAGTTGTATTTTATATT
       ACAGTGGCGGAT TA         TTAAGGGG GG          AGGAAAAA                                                                                                                                                     
       |||||||||||| ||         |||||||| ||          ||||||||                                                                                                                                                      
       TGTCACCGCCTA AT         GATTCCCC TC          CCCCCCCG                                                                                                                                                     
ATATACT            A  ---------        G  ----------        TCGGCGGGGGGGTCTTTTTTTATAAGGTTGAAAAAAAATAACGAAAAACCGTATAATAATATGTTTATACACAAAAACGGGGGGGATAAAAATAAAAGAAGAGATAAGAAAATACATTAAAATATATAAGAAAGAGATAAACAATAATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530698

TTCATATACAGTGGCGGATCTAGACAACATTTTAAGGGGGGGCGATTTTTTTAGGAAAAAATATATCCAACGGGAGGTTATAATTTTGGAGATTTCAGGGGCAGCGCCCCCGAATTTTTTTTCGGGTTATTCACAAAATATTGCTAAAATAAGTATATATTTATAATTTTGAAGTAAAAAAATATATTTTAGTAGTTGTATTTTATATTGTAATAACAAATAGAGAAAGAATATATAAAATTACATAAAAGAATAGAGAAGAAAATAAAAATAGGGGGGGCAAAAACACATATTTGTATAATAATATGCCAAAAAGCAATAAAAAAAAGTTGGAATATTTTTTTCTGGGGGGGCGGCTGCCCCCCCCTGCCCCTTAGTAAATCCGCCACTGTTCATATA

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