SE3520700

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6918
  • Mimulus guttatus
  • SE3520700
  • Mutator
  • M1
  • scaffold_14:6149423-6149676
  • AAATTATGT
  • TATGTGGGGTTTATTGCAATTAGTACTC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAT  TG G                      GTGTA                     C    CC              G    T      CTA     C      G       CACAACT    AA
    TA  T GGGTTTATTGCAATTAGTACTC     TTATATCGAATTGCTAAAAAA TACC  ATGTTATTTTATTG CAAA ACCCTT   TGATT AATTTT TTTAGCA       TTCT  
    ||  | ||||||||||||||||||||||     ||||||||||||||||||||| ||||  |||||||||||||| |||| ||||||   ||||| |||||| |||||||       ||||  A
    AT  A CTCAAATAACGTTAATCATGGG     AATGTAGCTTAACGATTTTTT ATGG  TACAATAAAATGAC GTTT TGGGGG   ACTAG TTAAAA AAATCGT       GGGG  
GTGT  TA G                      GTTAA                     C    CA              -    T      TAC     A      A       TAATCAT    AC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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