Plant MITE

SE3520701

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6919
Mimulus guttatus
SE3520701
Mutator
M48
scaffold_8:1707741-1708335
ATTAAAATA
GGGTAAATTCCACTTTACCCCCTTGTACTCTGTCTGAGAGTCACTTTACCCCCTCGTACTCTCAATTTTATCGATTTACCCCCTTGTACTTGTACAATTTCCCAATACAACCCTTTCCTTCAATTTTTGTCAATTTTGACTCTAACGCCATTTGGTC

Secondary structure and sequence

TSD TIR

5'

3'

ATTAAAATA                                                              C      A           C                  C               C T         G  A           A             AACTC    AATTACAAAATTGCCACTGCCTATAACGCGTCGTTTCTCCTCCGTCAATATTGTCATTTATTCTTCTCCCACCACTTCCCCTTCCAAGATATCCCCAAATTGAACCCCTAACTTAGTAAAAATCA
         GGGTAAATTCCACTTTACCCCCTTGTACTCTGTCTGAGAGTCACTTTACCCCCTCGTACTCT AATTTT TCGATTTACCC CTTGTACTTGTACAATTT CCAATACAACCCTTT C TCAATTTTT TC ATTTTGACTCT ACGCCATTTGGTC     TGTA                                                                                                                             
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| ||||||||||||||| | ||||||||| || ||||||||||| |||||||||||||     ||||                                                                                                                              
         CCCATTTAAGGTGAAATGGGGGAACATGAGACGGGTTCTTAGTGAAATGGGGGAGCATGAGA TTAAAG AGCTAAATGGG GAACATGAACATGTTAAA GGTTATGTTGGGAAA G AGTTGAAAA AG TAAAACTGAGA TGCGGTAAACCAG     TTCT                                                                                                                             
ATAAAATTA                                                              A      C           A                  A               A C         A  C           C             -----    CAGTTTTATAACTGCATTTATAACTCAAAAAAGCTAAAACTGAGAGCTCTAATCTTTTATCTTTCAAAGTGTGTAAGTATATAAAAAAAGAAACGTGACCCACCTTAGCTAGTTAAAAACCCAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520701

ATTAAAATAGGGTAAATTCCACTTTACCCCCTTGTACTCTGTCTGAGAGTCACTTTACCCCCTCGTACTCTCAATTTTATCGATTTACCCCCTTGTACTTGTACAATTTCCCAATACAACCCTTTCCTTCAATTTTTGTCAATTTTGACTCTAACGCCATTTGGTCAACTCTGTAAATTACAAAATTGCCACTGCCTATAACGCGTCGTTTCTCCTCCGTCAATATTGTCATTTATTCTTCTCCCACCACTTCCCCTTCCAAGATATCCCCAAATTGAACCCCTAACTTAGTAAAAATCAAGACCCAAAAATTGATCGATTCCACCCAGTGCAAAGAAAAAAATATATGAATGTGTGAAACTTTCTATTTTCTAATCTCGAGAGTCAAAATCGAAAAAACTCAATATTTACGTCAATATTTTGACTCTTGACCAAATGGCGTCAGAGTCAAAATCGAAAAAAGTTGACGAAAAGGGTTGTATTGGAAAATTGTACAAGTACAAGAGGGTAAATCGACGAAATTAAGAGTACGAGGGGGTAAAGTGATTCTTGGGCAGAGTACAAGGGGGTAAAGTGGAATTTACCCATTAAAATA

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