SE3530702

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6920
  • Mimulus guttatus
  • SE3530702
  • hAT
  • Hat36
  • scaffold_12:10144530-10144857
  • CCCATAAT
  • CAGGGCCGGCCCTGGGGTGGGGCGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
CCCATAAT         C  --------     ---         CA    CCACGCCCAGGGCCCAATTTCATAAGGGGCCCAAAATTTTAAATTTTTAATATATGTATTATGTATGTTTATGTGTAAAAATTATTTTATGGTTTTAAAAAAATTAATTTTCTACTTTT
        CAGGGCCGG CC        TGGGG   TGGGGCGAG  GGGC                                                                                                                       
        ||||||||| ||        |||||   |||||||||  ||||                                                                                                                        
        GTCCCGGCC GG        GCCCC   ACCCCGCTC  CATA                                                                                                                       
TAATACCC         A  CCGCATTA     CGG         -T    TTTATAAGTCATCAAGCCCCCATTTTTTCTCATTTTCTCATTTTTTTTAAGTGTAAATAAAAATTTTATTTAAATATTTTTCTTTTTTTCTTATTTTCTCATTTAAAAAATAAAAACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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