SE3530703

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6921
  • Mimulus guttatus
  • SE3530703
  • hAT
  • Hat32
  • scaffold_2:4570921-4571144
  • GTCCCTAA
  • CAGGGGCGGACCCAAGGTATACCTTGGGGGGCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCCCTAA              --A     ACC        C  -------------------CCGCCCCT   GGAAAAAAAATTTTTACCTGCTTTTTATTAAATTTTTAATATTTTGTG
        CAGGGGCGGACCCA   GGTAT   TTGGGGGG CT                           GCA                                                
        ||||||||||||||   |||||   |||||||| ||                           |||                                                T
        GTCCCCGCCTGGGT   TCATA   AACCCCCC GA                           TGA                                                
AATCCCTG              CCC     ACC        C  TCTTAAAAAAAAAACCTGATTTTATTA   TTTAAACTTCAAACCCCCCCGATTTACCATATTTAATTATTTATTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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