SE3520704

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6922
  • Mimulus guttatus
  • SE3520704
  • Mutator
  • M9
  • scaffold_13:6267704-6268010
  • AAAATATAA
  • GGGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
 AAAATATAA       AATACAA     T     C    T          A        A    C       ACAAAA   -   TCTAGTCCCTTGTGTTACGAAAATTTAACACTTTTAGTCGTTTCTGTTAATTTTCTGTTAAAACTAACGGTA
          GGGGAAA       TTTTT TCCCT AAGT TGCACCGATT CATATTTG TCCC TATGTTC      AAC ACA                                                                        
          |||||||       ||||| ||||| |||| |||||||||| |||||||| |||| |||||||      ||| |||                                                                         
          CCTCTTT       AAAGG AGGGA TTCA ACGTGGCTAA GTGTAAAC AGGG GTACAAG      GTT TTA                                                                        
GAATATAAAA       -AATATC     T     C    C          A        C    A       ------   A   AATTGTGAAAACAAGTAAAGGCAGTTAAATGGTAATCAGGCAATCAATTCCGTCCTTATACGTGTGCGAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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