SE3550705

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6923
  • Mimulus guttatus
  • SE3550705
  • PIF/harbinger
  • To8
  • scaffold_8:7814149-7814495
  • TAA
  • AGAGGGTGTTTGGCTAAGCTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                       ---------TTTA       GATA    CCTACGTCTGATAAGATGTTTTAAGAGCTGATAAGCTGTTACGTCTTATTTTTGGGATTAATTTTTAGAGTGTTTGGATAATTAGCTTATTTCCTATTTTTACTCATAATAAGATCTTAAATAAAAA
  AGAGGGTGTTTGGCTAAGCTTAT             AACAGCT    AGTT                                                                                                                               
  |||||||||||||||||||||||             |||||||    ||||                                                                                                                                
  TCTCCCACAAACCGATTCGAATA             CTCGAAT    ATTC                                                                                                                               
AA                       TTCTACAATTTTC       ----    TACAAAATCTCGAATATTCGAGAAGGTTTCACAAACCATTAAAAAAAATTTTTTCTAGAATTAAAAAATTTTTTATTCGACAACCTCTCGTTTATTCTAGAAAAATTTTTTTATGGAGATGGGGTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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