SE3540706

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6924
  • Mimulus guttatus
  • SE3540706
  • CACTA
  • Ca1
  • scaffold_10:8056742-8057023
  • TTA
  • ACACTAGTAGAAAAATGGCTTTTTACTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT              ATG            ----GA     A      CAA AAGGTATCAAATTCGTAGTAAAAGGCTTTTGCTACGAATTTGCTCCGTAGTATATACGGGCGTGACAAAAACTTTTCTACGGTAAATGGCC
  ACACTAGTAGAAAA   GCTTTTTACTAC      CCATT ACCGTA   A                                                                                           
  ||||||||||||||   ||||||||||||      ||||| ||||||   |                                                                                           G
  TGTGATCATCTTTT   CGAAAAATGATG      AAAAC GATGCC   G                                                                                           
AT              AAA            ATTAAA     -      --A TTTTCGGCATTGTTTTCCCTGAAAAATGATGCTCTGTTAAAACTTCATCATCATTTATAATCCTAAATGGCATCGTTTTTTCATAAACCAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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