SE3520708

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6926
  • Mimulus guttatus
  • SE3520708
  • Mutator
  • M21
  • scaffold_13:403609-404051
  • GTTTTTTAA
  • GAAATGTTAAATGTCGTTTCAATTTTATTAATACCGTTTTGACTTCTGATGTGATTTTGACCTGTTTCTAGTTTGATTTTGGCAAAATTCAAAACACGGAAATTGTAGTCCTTTGAGTTAGCTTTCTAATCCAACTTGAATCAGCTAGATTGGATGTTGGTGACAAAGTTATGAATGAATGAGTTACATT

Secondary structure and sequence

TSD    TIR
5'



3'
GTTTTTTAACT  AA  T              A     T      C   T       T               -     C        T            CAA         A       C                                 G T            -G    CAA  T    A      G     -    TTGAATATTAGATAA    A    TG
           GA  TG TAAATGTCGTTTCA TTTTA TAATAC GTT TGACTTC GATGTGATTTTGACC TGTTT TAGTTTGA TTTGGCAAAATT   AACACGGAA TTGTAGT CTTTGAGTTAGCTTTCTAATCCAACTTGAATCA C AGATTGGATGTT  GTGA   AG TATG ATGAAT AGTTA CATT               CCCA AGCA  
           ||  || |||||||||||||| ||||| |||||| ||| ||||||| ||||||||||||||| ||||| |||||||| ||||||||||||   ||||||||| ||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||  ||||   || |||| |||||| ||||| ||||               |||| ||||   
           CT  AC ATTTACAGCAAAGT AAAAT ATTATG CAA GCTGAAG TTACACTAGAACTGG ATAAA ATCAGACT AAGTCGTTTTGA   TTGTGCCTT AGCATCA GAAACTCAATCGAAAGATTAGGTTGAACTTAGT G TTTAGCCTACAG  CACT   TC ATAC TACTTA TTAAT GTAA               GGGT TTGT  
AATTTCTTGCC  AC  T              C     T      T   T       T               T     A        T            ATA         A       A                                 G T            AG    CTC  T    G      G     T    --------------C    A    GA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End