SE3520709

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6927
  • Mimulus guttatus
  • SE3520709
  • Mutator
  • M18
  • scaffold_6:17624115-17624466
  • TTATTTTTA
  • AGGACAAAATGCACTTCACCCCCTACAAATTTTCCATTTTCGCACTTTACCCCCTAAAAATTCAAGAATTGGATAACCCCCTTCAAAATATTATTTTGGTTGCACTTTGCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTTTT   A    A     T          C       CC        A       C   AA     --C     T     AA       C     A       G       T      CATAAG    TTTTTTATGGGCATTGTGCAACAAAAATAACATTTTGAAGAGGCAATG
        AGG CAAA TGCAC TCACCCCCTA AAATTTT  ATTTTCGC CTTTACC CCT  AAATT   AAGAA TGGAT  CCCCCTT AAAAT TTATTTT GTTGCAC TTGCCC      CCAT                                                
        ||| |||| ||||| |||||||||| |||||||  |||||||| ||||||| |||  |||||   ||||| |||||  ||||||| ||||| ||||||| ||||||| ||||||      ||||                                                 
        TCC GTTT ACGTG AGTGGGGGAT TTTAAAG  TAAAAGCG GAAATGG GGA  TTTAA   TTTTT ACTTA  GGGGGAA TTTTA AATAAGA CAACGTG AACGGG      TTAT                                                
ATTTTTAT   C    A     T          C       AT        C       A   -G     AAA     C     CG       A     C       A       T      -----A    CCTTTTAAGGCTACCTAATAAGTAGCCGTAAACTCATAAAAACAACGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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