SE3520710

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6928
  • Mimulus guttatus
  • SE3520710
  • Mutator
  • M2
  • scaffold_12:21432237-21432502
  • TAAAAACAA
  • AGAGCAAATTACGGCCAACCCCCTGAGGTAAGGTCAAATTACGAGAAACCCCTTCCTGTTTGGGTAATTACAACTACCCCTTCAACTATGATTTTTCTTACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAACA  A              A    C                         C     CC          A      C  C             AT  T       AAAAA      CTTTAATTG    A
        AG GCAAATTACGGCCA CCCC TGAGGTAAGGTCAAATTACGAGAAA CCCTT  TGTTTGGGTA TTACAA TA CCCTTCAACTATG  TT TCTTACA     ACCCTT         GTAA 
        || |||||||||||||| |||| ||||||||||||||||||||||||| |||||  |||||||||| |||||| || |||||||||||||  || |||||||     ||||||         |||| T
        TC CGTTTAATGCCGGT GGGG ATTCCATTCCAGTTTAATGCTTTTT GGGAA  ACAAACCCAT AATGTT GT GGGGAGTTGATAC  AA AGAATGT     TGGGAA         CATT 
AACAAAAA  C              -    A                         T     TA          A      A  A             AT  T       GCAGG      ----TATCA    T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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