Plant MITE

SE3530711

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6929
Mimulus guttatus
SE3530711
hAT
Hat11
scaffold_14:19476907-19477622
ATCACACA
TAGGGGTG

Secondary structure and sequence

TSD TIR

5'

3'

ATCACACA        TAAAT   A   AA  --    ---     -   CT -        AATTTTCAAAAAATTTCGGAAGTAAAAAATGCGGTCCAATTTCCGTTCCAAAAAAATCGGAATGCAAAAATTCATTCCAATTTCGGAATGCTTCGGAACCGGCTGAATTTCGGAAATTACATTACTTTATAATCTCTTATTCCAAATTTCGGAAATTACATTACTTTATAATCTCTTGTTTTCTATCTTTTTTTTATTTTTGCAGAAAAATGTAAGAAAATTCAAAAGAGAGTTCGAAAAATATAATAAATAAAAACACATGTAGGAATAATGACTTGAAACATGTATTTTCTTATGAGGAAAA
        TAGGGGTG     CAG CGG  TG  GAAC   GGAAA TGA  T TTTTTGAA                                                                                                                                                                                                                                                                                                                
        ||||||||     ||| |||  ||  ||||   ||||| |||  | ||||||||                                                                                                                                                                                                                                                                                                                 
        ATCCCCGC     TTT AGC  TT  CCTT   AGCTT AGG  C GTTAAAAC                                                                                                                                                                                                                                                                                                                
ACACACTA        ----C   -   --  TA    AAA     A   -- G        AAGACTTTTATTGGCTTAAACCTTGGTATAAAAAATAAGGCTAAATCTTTCAAAGTTAAAGGCTAAGAGGGTTTAAATAAACCTTGCCTTAATCTTATTATATGTTTTAATGGCCTCTAAGGCTAAAGGCTAGGTTAAATCAAGATTTATAAGATTACCAAAAAATTTTATATATTATATTAAAATACGATATAAAAAAAATTAAGATGTTGTATTGAAACCAATATAAAATTTACTTTTTATATTTATGGCTGTCCCAGTTCATTTAATTTTAAAATCTTTTCTCATTAACCAATACAACGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530711

ATCACACATAGGGGTGTAAATCAGACGGAATGGAACGGAAATGACTTTTTTTGAAAATTTTCAAAAAATTTCGGAAGTAAAAAATGCGGTCCAATTTCCGTTCCAAAAAAATCGGAATGCAAAAATTCATTCCAATTTCGGAATGCTTCGGAACCGGCTGAATTTCGGAAATTACATTACTTTATAATCTCTTATTCCAAATTTCGGAAATTACATTACTTTATAATCTCTTGTTTTCTATCTTTTTTTTATTTTTGCAGAAAAATGTAAGAAAATTCAAAAGAGAGTTCGAAAAATATAATAAATAAAAACACATGTAGGAATAATGACTTGAAACATGTATTTTCTTATGAGGAAAAATGCAACATAACCAATTACTCTTTTCTAAAATTTTAATTTACTTGACCCTGTCGGTATTTATATTTTTCATTTAAAATATAACCAAAGTTATGTTGTAGAATTAAAAAAAATATAGCATAAAATTATATTATATATTTTAAAAAACCATTAGAATATTTAGAACTAAATTGGATCGGAAATCGGAATCTCCGGTAATTTTGTATATTATTCTAATTCCGTTCCAAATAAATTTGGGAGAATCGGAAATTGAAACTTTCTAAATCGGAATAAAAAATATGGTTCCAAATTCGGTTATTTTCAGAACAAAATTGGCGGAATTCGAAAATTCCATTTCGATTTCCGCCCCTAATCACACA

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