Plant MITE

SE3520712

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6930
Mimulus guttatus
SE3520712
Mutator
M14
scaffold_6:18927802-18928049
TATAATTTA
GGTAAACTACAATCAACTCCCTGAGGTAAACTGTAATTACGAAA

Secondary structure and sequence

TSD TIR

5'

3'

TATAATTTAG   A  C  C       T           --A    AA        AAAAA     A     GAAAAT       TAG    - -AGC        A           CC  C    TT
          GGT AA TA AATCAAC CCCTGAGGTAA   CTGT  TTACGAAA     CCCTT TTTTT      TTACATC   CACC C    AGTTTGTA ATTTCTTACAT  AC CCCT  
          ||| || || ||||||| |||||||||||   ||||  ||||||||     ||||| |||||      |||||||   |||| |    |||||||| |||||||||||  || ||||  T
          CCA TT AT TTAGTTG GGGACTTCATT   GATA  AATGTTTT     GGGAG AAAAA      AATGTAG   GTGG G    TTAAACAT TAAAGAATGTA  TG GGGA  
ATTTTATATA   A  A  T       -           ACA    --        -ATGA     G     GGCATT       ---    A AACT        C           AT  T    TG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520712

TATAATTTAGGGTAAACTACAATCAACTCCCTGAGGTAAACTGTAATTACGAAAAAAAACCCTTATTTTTGAAAATTTACATCTAGCACCCAGCAGTTTGTAAATTTCTTACATCCACCCCCTTTTGTAGGGTGTTAATGTAAGAAATCTACAAATTTCAAGAGGTGGATGTAATTACGGAAAAAGGAGGGAGTATTTTGTAAATAGACATTACTTCAGGGGTTGATTTTAATTAACCATATATTTTA

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