Plant MITE

SE3520713

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6931
Mimulus guttatus
SE3520713
Mutator
M6
scaffold_5:14721951-14722110
CAATGTTTG
CAATGTTTGGGGTTATTTCTATGCTACA

Secondary structure and sequence

TSD TIR

5'

3'

    TGT     G    TT          C  GATGAAGGTTATACTGGGTATTTTTTTACAGTTGATCTACACACACCAA
 CAA   TTGGG TTAT  CTATGCTACA CC                                                 
 |||   ||||| ||||  |||||||||| ||                                                  
 GTT   AACCC AATA  GATACGATGT GC                                                 
G   TGT     G    -T          A  CCATCTAGAAATGGTAAGTATATGTGTGTTTGTGTGTGTGTGTGGGTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520713

CAATGTTTGGGGTTATTTCTATGCTACACCCGATGAAGGTTATACTGGGTATTTTTTTACAGTTGATCTACACACACCAATGTGGGTGTGTGTGTGTGTTTGTGTGTATATGAATGGTAAAGATCTACCCGATGTAGCATAGTATAAGCCCAATGTTTGG

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