SE3550714

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6932
  • Mimulus guttatus
  • SE3550714
  • PIF/harbinger
  • To13
  • scaffold_11:13919458-13919828
  • TAA
  • AGAGCAACTCCAATGG

Secondary structure and sequence

TSD    TIR
5'



3'
TA                GAGATATCAAAAT  A         ATTCAT    T   --T  TA  A         ACT        ----        -A    AACCACAAGT   AAATAGATTATCAAATTATAAGTATATGAATAATTATATTTTTAAATGCCACGTGTCAAATAGTGATAGGTTAATTGGGT
  AGAGCAACTCCAATGG             GG GCATTAAAT      TCGA ACT   GA  TA TACTTTGAT   TTTTGAAA    AAAAATTC  CTCC          ATC                                                                                
  ||||||||||||||||             || |||||||||      |||| |||   ||  || |||||||||   ||||||||    ||||||||  ||||          |||                                                                                 
  TCTCGTTGAGGTTATC             TC CGTGATTTA      AGTT TGA   TT  AT GTGAAACTA   GAGACTTT    TTTTTAGG  GAGG          TAA                                                                                
AA                -------------  -         CTCCAT    -   TTT  TG  G         --C        AATT        AA    -CTACCTCCG   TTTACCTCTTAATAAAACTATGAGTTGATGGGGCTCCACGTTTTTATGAGGGACCTTTTACTCCATAGTTTTTATATTGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End