Plant MITE

SE3520715

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6933
Mimulus guttatus
SE3520715
Mutator
M6
scaffold_14:23547565-23547736
AGACATATA
ATATATGGCTTATACTATGCTACACCGGGTGAAATACACCGGGTAGATCTTTACC

Secondary structure and sequence

TSD TIR

5'

3'

AGAC       G  ---   -A            G      --A          A   -C      ATTCATATACACACAAACAC         CAC
    ATATATG CT   TAT  CTATGCTACACC GGTGAA   TACACCGGGT GAT  TTTACC                    ACACACACC   
    ||||||| ||   |||  |||||||||||| ||||||   |||||||||| |||  ||||||                    |||||||||    
    TATATAC GA   ATA  GATACGATGTGG CCACTT   ATGTGGCCCA CTA  AAATGG                    TGTGTGTGG   
           A  CCA   AA            G      CCA          -   AA      ------------CAACTAGA         TTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520715

AGACATATATGGCTTATACTATGCTACACCGGGTGAAATACACCGGGTAGATCTTTACCATTCATATACACACAAACACACACACACCCACATTGGTGTGTGTAGATCAACGGTAAAAAATCACCCGGTGTAACCTTCACCGGGTGTAGCATAGAAATAACCAGACATATAT

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