Plant MITE

SE3520716

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6934
Mimulus guttatus
SE3520716
Mutator
M6
scaffold_3:3905860-3906028
TCTATTTTG
GGGTTATTTCTATGCTACACCCGGTGAAGGTTACACCGGGTGATTTTTTACCGTTGATCTACACACACC

Secondary structure and sequence

TSD TIR

5'

3'

TCTATTTT  G    TT            C       GT           AT           ------------   C          AAT
        GG TTAT  CTATGCTACACC GGTGAAG  TACACCGGGTG  TTTTTACCGTT            GAT TACACACACC   
        || ||||  |||||||||||| |||||||  |||||||||||  |||||||||||            ||| ||||||||||    
        CC AATA  GATACGATGTGG CCACTTT  ATGTGGCCCAT  AGAAATGGTAA            TTG GTGTGTGTGG   
TTTTATCT  G    -T            C       --           CT           GTATATGTGTGT   T          GTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520716

TCTATTTTGGGTTATTTCTATGCTACACCCGGTGAAGGTTACACCGGGTGATTTTTTACCGTTGATCTACACACACCAATGTGGGTGTGTGTGTGTTTGTGTGTATATGAATGGTAAAGATCTACCCGGTGTATTTCACCCGGTGTAGCATAGTATAAGCCTCTATTTT

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