SE3520718

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6936
  • Mimulus guttatus
  • SE3520718
  • Mutator
  • M18
  • scaffold_1:3178314-3178724
  • ATCATTTTA
  • GGACAAAATGAACTTCACCCCTGCAAATTTCTTATTTTAGCACTTTCCTTACTAAAAATTCAAAAACTAGATAATCCCCTCAAAATATTATTTTGGTTGCACTTTGCCCC

Secondary structure and sequence

TSD    TIR
5'



3'
ATCATTTTA  A    A  A  T        -GC      CTT     A       -    A  A      CA    CTA  TAA     ---       A       G       T       ATAAGCCCAT          -----       --------CAACA --    AACATTTTAAAGGGGTAATGTGCGAAAAAATAATGTTTTT
         GG CAAA TG AC TCACCCCT   AAATTT   ATTTT GCACTTT CCTT CT AAAATT  AAAA   GA   TCCCC   TCAAAAT TTATTTT GTTGCAC TTGCCCC          TTTTGGTGGA     CATTGTA             A  AAAT                                        
         || |||| || || ||||||||   ||||||   ||||| ||||||| |||| || ||||||  ||||   ||   |||||   ||||||| ||||||| ||||||| |||||||          ||||||||||     |||||||             |  ||||                                         
         CC GTTT AC TG AGTGGGGG   TTTAAA   TAAAA CGTGAAA GGGG GA TTTTAA  TTTT   CT   AGGGG   AGTTTTA AATAAGA CAACGTG AACGGGG          AAAGCTACCT     GTAGCAT             C  CGTA                                        
ATTTTACTA  C    A  G  T        ATT      TTT     A       T    -  G      AC    TCA  TAC     GAA       C       A       T       GTATAGTTTT          AATAA       TAAATCATAAAAA AA    CATCGAGGAAATATACAAAATAACAACGTGCAATGGGGAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End