SE3550720

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6938
  • Mimulus guttatus
  • SE3550720
  • PIF/harbinger
  • To2
  • scaffold_14:16170861-16171081
  • TTA
  • AGGTCTCGTTTGGTTGCCGGGATAAGATTAGCCAGGATAAGATTAAATAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT    C           CC    TAA         G   AA           CTAATGAAAACCAAATGATCCAATAAAAAACA    TAGAAAGCAAGATAAGCCACGATAACATAATATTTGCGGA
  AGGT TCGTTTGGTTG  GGGA   GATTAGCCA GAT  GATTAAATAAT                                TGTC                                        
  |||| |||||||||||  ||||   ||||||||| |||  |||||||||||                                ||||                                         
  TCCG AGCAAACCAAC  CCCT   CTAATCGGT CTA  TTGATTTATTA                                CCTG                                        
AT    A           --    ---         A   -A           -------------------------------A    AAACAAACTACAAACCATAGGGTTATTGAACGGCCCAGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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