SE3550723

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6941
  • Mimulus guttatus
  • SE3550723
  • PIF/harbinger
  • To8
  • scaffold_8:14392960-14393305
  • TTA
  • AGAGGGTGTTTGGCTAAGCTTATAAGATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                       --A     TTAAAAG      ---------             -     T       CTTCC    -  TTTGGTAATTTTTTACAAAAAGATCTTATTTTTTTTTTTAAATAAGCTGTTGGAGAGCAAATAAGATATTTTTAAATAAGTACCTC
  AGAGGGTGTTTGGCTAAGCTTAT   AGATG       GAGCTT         ATAAGATGTTTTA GAGCT ATAAGCT     AAAG TG                                                                                      
  |||||||||||||||||||||||   |||||       ||||||         ||||||||||||| ||||| |||||||     |||| ||                                                                                      T
  TCTCCCACAAACCGATTCGAATA   TTTGT       TTCGAG         TATTCTACAAAAT CTCGA TATTCGA     GTAG AT                                                                                      
AT                       AAA     -TGACTA      AATGCAAAC             T     C       -CAAT    A  AAAAATCCTATTAAAAATTTCACAAACCTATTACCTGAATAAAGGATAAAAATGAGTAATTTTCTAGAATTTATTTTTCCACCCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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