SE3530724

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6942
  • Mimulus guttatus
  • SE3530724
  • hAT
  • Hat1
  • scaffold_13:18317933-18318484
  • TATAGAGA
  • ATAGGGATGGCAGCGGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAGAG             C     GG    CCTCGAAAAAGTGCAATACCAGAACCATTACCATTTAATATAGCTCAAACCATGACCGTACCAAACCCTTTTAAAAAGTTGATGAAAATACCACAACCATTACCACGAATATCCGGGTATCCACGGGTACCCATTTACCATTTAAATTACGGTAATAAAAAATAACTTTAGATCCGATAACGTTTAAGTAACTCACAGAAAAGAGGAAGAAAAAAAGAAAAGAAAAAAAAGTAAATTATACAAAT
       ATAGGGATGGCAG GGAGC  GTAC                                                                                                                                                                                                                                                     
       ||||||||||||| |||||  ||||                                                                                                                                                                                                                                                      
       TATCCCTACCGTT TTTTG  GGCT                                                                                                                                                                                                                                                     
AGAGATA             T     --    TGGCGATCGATAGGCGCCCATAGGCGAGGCAAATTTTGGGCAATGGCTTTGGTAATCCCAAACCATTACCAAAACCATTTTCTTTTCTTTTGGCAGTACCAAAACCATACCAAGACCAAAATGGAAACGCCAGTACCCATGGGCTGGTAAATTATATATATATATATATATATATAATAAAGTTGTTATACTTATTTGTTTACCGTTTTAAAATTTATATCATAATTTATTAAATCCCTCCCATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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