Plant MITE

SE3520725

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6943
Mimulus guttatus
SE3520725
Mutator
M6
scaffold_3:3905860-3906029
CAAAATAGA
GGCTTATACTATGCTACACCGGGTGAAATACACCGGGTAGATCTTTACC

Secondary structure and sequence

TSD TIR

5'

3'

CAAAATAGA  C    -A            G      --A          A   -C      ATTCATATACACACAAACAC         CAC
         GG TTAT  CTATGCTACACC GGTGAA   TACACCGGGT GAT  TTTACC                    ACACACACC   
         || ||||  |||||||||||| ||||||   |||||||||| |||  ||||||                    |||||||||    
         CC AATA  GATACGATGTGG CCACTT   ATGTGGCCCA CTA  AAATGG                    TGTGTGTGG   
 AGATAAAA  C    AA            G      CCA          -   AA      ------------CAACTAGA         TTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520725

CAAAATAGAGGCTTATACTATGCTACACCGGGTGAAATACACCGGGTAGATCTTTACCATTCATATACACACAAACACACACACACCCACATTGGTGTGTGTAGATCAACGGTAAAAAATCACCCGGTGTAACCTTCACCGGGTGTAGCATAGAAATAACCCAAAATAGA

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