SE3550726

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6944
  • Mimulus guttatus
  • SE3550726
  • PIF/harbinger
  • To8
  • scaffold_5:1806785-1807130
  • TTA
  • AGAGGGTGTTTGGCTAAGCTTATAAGATGCTAAAATGAGCTTATAAGATGTTTTAGAGCTTATAAGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                       --A    -   AAA     ---------  T             -     T       CTTCCAA   -  TTGGTAATTTTTTTAAAAAAGATCTTAATTTTTTTAAAAATAAGCTGTTGGAGAGCAAATAAGATCTTTTTAAATAAGTACCTCTA
  AGAGGGTGTTTGGCTAAGCTTAT   AGAT GCT   ATGAG         CT ATAAGATGTTTTA GAGCT ATAAGCT       AGT GT                                                                                      
  |||||||||||||||||||||||   |||| |||   |||||         || ||||||||||||| ||||| |||||||       ||| ||                                                                                       
  TCTCCCACAAACCGATTCGAATA   TTTG CGA   TATTC         GA TATTCTACAAAAT CTCGA TATTCGA       TAG AT                                                                                      
AT                       AAA    T   --C     AAGAATGTA  C             T     C       --CAATG   A  AAAAATCCTAATTAAAAATCTCACAAACCTATTATTCGAATAAAGGATTAAAATGAGTAATATTCTAGAATTTATTTTTCCACCCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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