SE3550727

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6945
  • Mimulus guttatus
  • SE3550727
  • PIF/harbinger
  • To8
  • scaffold_7:10358222-10358567
  • TAA
  • AGAGGGTGTTTGGCTAAGCTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                       --------AAG    TAAAATGAGCATATAAGATGTTTTAGAGCTTATAAGCTCTTCCAAAGTGTTTGATAATTTTTTTAAAAAAGATCTTTTTTTTTTTTTAAAATAAGTTGTTGGAGAGCAAATAAGATTTTTTAAATAAGTACCTCTAC
  AGAGGGTGTTTGGCTAAGCTTAT           ATGT                                                                                                                                         
  |||||||||||||||||||||||           ||||                                                                                                                                          
  TCTCCCACAAACCGATTCGAATA           CTAT                                                                                                                                         
AA                       AAATTTGTCAA    TCAAGAATGTAGACTATTCTACAAAATTCTCGAATATTCAATAATGTAGAATAAAAATACTAATTAAAAATCTCACAAACCTATTATTCGAATAAAGGATAAAAATGAGTAATATTCTAGAATTTATTTTACCACCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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