SE3520728

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6946
  • Mimulus guttatus
  • SE3520728
  • Mutator
  • M14
  • scaffold_11:23384091-23384340
  • TATTTATTT
  • TATTTAGGGTAAATTACAACCACCTTCCTGAGGTAAAGTGTATTACAAAAAAACCCTTTTTGTTTGACCAATTACATCCAACTCCTTGCAATTTGTAAATTTCTTAC

Secondary structure and sequence

TSD    TIR
5'



3'
TATT  TT                 A   T          A  G    -               TT    GA     ---      CAA      GC                  ATTCAT      AC
    TA  TAGGGTAAATTACAACC CCT CCTGAGGTAA GT TATT ACAAAAAAACCCTTT  GTTT  CCAAT   TACATC   CTCCTT  AATTTGTAAATTTCTTAC      CACCCT  
    ||  ||||||||||||||||| ||| |||||||||| || |||| |||||||||||||||  ||||  |||||   ||||||   ||||||  ||||||||||||||||||      ||||||  A
    AT  ATCCCATTTAATGTTGG GGG GGATTTCATT CA ATAA TGTTTTTTTGGGGAG  CAAA  GGTTA   ATGTAG   GGGGAA  TTAAACATTTAAGGAATG      GTGGGA  
ATTT  TT                 C   -          A  G    A               -T    --     TTA      ATA      AT                  -CAATT      AA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End