SE3520729

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6947
  • Mimulus guttatus
  • SE3520729
  • Mutator
  • M9
  • scaffold_7:16058903-16059238
  • GTTGTATAT
  • GTATATAGGAAAAAAATACAGTTTTAGTCCCTCACATTAGCACCGATTTCACATTTGGTCCCTCGTGTTCACAAAAAACACATTTGGTCCCTCATGTTTCATAAATTCAACACTTTTAGTCATTTCCGTCAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTT       ---      AAA         A        CA  A          C           -  C       C                             TA    C   AC    A       C         -------------------------------  CGTTAAAACTAAC
   GTATATA   GGAAAA   TACAGTTTT GTCCCTCA  TT GCACCGATTT ACATTTGGTCC CT GTGTTCA AAAAAACACATTTGGTCCCTCATGTTTCA  AATT AAC  TTTT GTCATTT CGTCAATTT                               TC             
   |||||||   ||||||   ||||||||| ||||||||  || |||||||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||||  |||| |||  |||| ||||||| |||||||||                               ||             G
   TATATGT   CCTTTT   ATGTCAAAA TAGGGAGT  AA CGTGGCTAAA TGTAAATCAGG GA TACAAGT TTTTTTGTGTAAATCAGGGAGTACAAAGT  TTAA TTG  AAAA CAGTAAA GCAGTTAAA                               CG             
          TGC      --A         G        TC  A          A           A  -       A                             TA    A   CA    C       A         TCACAATTAGACAATCAATTCAGTAACTACC  TATCCGAACTAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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