Plant MITE

SE3520731

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6949
Mimulus guttatus
SE3520731
Mutator
M56
scaffold_5:14686437-14687220
TAATATAAA
AGGGTAAAATTCATTTTGCACCCCTGTACTATGTAAAAGGTATCATTTACCCCCCTAATGTATAGAAAACATCAAACACCCCCCT

Secondary structure and sequence

TSD TIR

5'

3'

TAATATAA                       C          A   G                 AAT                          --   T    ---     AATG --     -- TTTT     T TTAAATTTTGAGTGTGCAATGACTCTTTTACCCTGTTTTTATGTTTGATATAATTCCTAACTTTTTCTAGGCATATTTTTTTGTGGATTGTTGACGATTTCTAGCGTTAGTTCAAATTAGGACTTGTGTCGATTTTAGAATTTGATTTTATTTTTGGTTTTCTTTTTCGAGGATTTTTGCATTATAATATGAAAAGCTTTGTTTTTAATTTGCAATTCATTCATATGGTTTTATTTCAATTTTAGGTTTTCATTTAGATTTCAG
        AGGGTAAAATTCATTTTGCACCC TGTACTATGT AAA GTATCATTTACCCCCCT   GTATAGAAAACATCAAACACCCCCCT  ATT TTAA   CGGTC    G  TCAAA  T    AACGG G                                                                                                                                                                                                                                                                        
        ||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||   ||||||||||||||||||||||||||  ||| ||||   |||||    |  |||||  |    ||||| |                                                                                                                                                                                                                                                                        A
        TCCCATTTTAAGTAAAACGTGGG ACATGATACG TTT CATAGTAAATGGGGGGA   CATATCTTTTGTAGTTTGTGGGGGGA  GCA ATCA   AAAAG    A  AAGGC  T    CAGTT T                                                                                                                                                                                                                                                                        
AAATATAA                       A          C   A                 CTT                          CG   -    AAA     ---- TT     AA ----     - CGTAAACTGGCTGATAACGTTTCTTTACAACGGGAAAAAAAAAAATTGCTTTTATGGGGTTTTTAAAAATTGTATATTCTACGAAGCAAACCTGTTTCACAGTGGCCTCAAAAGTAAAAAAAGACGGGAAACAAAGTGAAATAAGTTAGTAAAAAAAATTGTAAAAGTCGGTAAAAAGAATATTTCTTCGACTTATCAGCTTATTTATTCTTACTTCGCAATGTCTAATACTTACATTTTGGGTGTTTTCCCTTTTGATTTTCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520731

TAATATAAAGGGTAAAATTCATTTTGCACCCCTGTACTATGTAAAAGGTATCATTTACCCCCCTAATGTATAGAAAACATCAAACACCCCCCTATTTTTAACGGTCAATGGTCAAATTTTTAACGGTGTTAAATTTTGAGTGTGCAATGACTCTTTTACCCTGTTTTTATGTTTGATATAATTCCTAACTTTTTCTAGGCATATTTTTTTGTGGATTGTTGACGATTTCTAGCGTTAGTTCAAATTAGGACTTGTGTCGATTTTAGAATTTGATTTTATTTTTGGTTTTCTTTTTCGAGGATTTTTGCATTATAATATGAAAAGCTTTGTTTTTAATTTGCAATTCATTCATATGGTTTTATTTCAATTTTAGGTTTTCATTTAGATTTCAGAGCTTTTAGTTTTCCCTTTTGTGGGTTTTACATTCATAATCTGTAACGCTTCATTCTTATTTATTCGACTATTCAGCTTCTTTATAAGAAAAATGGCTGAAAATGTTAAAAAAAATGATTGAATAAAGTGAAACAAAGGGCAGAAAAAAATGAAAACTCCGGTGACACTTTGTCCAAACGAAGCATCTTATATGTTAAAAATTTTTGGGGTATTTTCGTTAAAAAAAAAAAGGGCAACATTTCTTTGCAATAGTCGGTCAAATGCTTTGACTAACGGAATTAGAAAAAAAACTAACGGCAGGGGGGTGTTTGATGTTTTCTATACTTCAGGGGGGTAAATGATACATTTCGCATAGTACAAGGGTGCAAAATGAATTTTACCCTAATATAAA

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