Plant MITE

SE3520732

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6950
Mimulus guttatus
SE3520732
Mutator
M9
scaffold_3:11823463-11823768
TTGATTTTA
TGATTTTATGGGAAAATTACAGTTTTTATCCCTCAATTTGCACTGATTTCGC

Secondary structure and sequence

TSD TIR

5'

3'

T   TT   T       T             C     -      -   A      G     C CCTTATGTTCACAAAAAACATATTTGGTCCCTCATGTTTCAATAATTTAACAGTTTTGGTCATTTTCGTCAGCTTAATATTAGTCTGTCAGT
 TGA  TTA GGGAAAA TACAGTTTTTATC CTCAA TTTGCA CTG TTTCGC TGTGA C                                                                                            
 |||  ||| ||||||| ||||||||||||| ||||| |||||| ||| |||||| ||||| |                                                                                            T
 ATT  AGT CCCTTTT ATGTCAAAAGTAG GAGTT AAACGT GAT AAAGTG TAAAC C                                                                                            
T   TT   T       T             T     C      A   -      -     - AGGAGGTACAAAGTTTTTAAGTTGTAAAAATCAGGTAAAACAGTTAAAAGGCATTTTTGATTGCCTTAGTTCACACACGGGTAGTAACGGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520732

TTGATTTTATGGGAAAATTACAGTTTTTATCCCTCAATTTGCACTGATTTCGCGTGTGACCCCTTATGTTCACAAAAAACATATTTGGTCCCTCATGTTTCAATAATTTAACAGTTTTGGTCATTTTCGTCAGCTTAATATTAGTCTGTCAGTTAAGGCAATGATGGGCACACACTTGATTCCGTTAGTTTTTACGGAAAATTGACAAAATGGACTAAAAATGTTGAATTTTTGAAACATGGAGGACCAAATGTGAAATAGATGCAAACTTGAGTGATGAAAACTGTATTTTTCCCTTGATTTTAT

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